update dockefile and folder

.devcontainer/install_zsh.sh

-#!/usr/bin/env bash
-#-------------------------------------------------------------------------------------------------------------
-# Copyright (c) Microsoft Corporation. All rights reserved.
-# Licensed under the MIT License. See https://go.microsoft.com/fwlink/?linkid=2090316 for license information.
-#-------------------------------------------------------------------------------------------------------------
-#
-# Docs: https://github.com/microsoft/vscode-dev-containers/blob/main/script-library/docs/common.md
-# Maintainer: The VS Code and Codespaces Teams
-#
-# Syntax: ./common-debian.sh [install zsh flag] [username] [user UID] [user GID] [upgrade packages flag] [install Oh My Zsh! flag] [Add non-free packages]
-
-set -e
-
-INSTALL_ZSH="true"
-USERNAME=$(whoami)
-INSTALL_OH_MYS="true"
-
-# ** Shell customization section **
-if [ "${USERNAME}" = "root" ]; then
-    user_rc_path="/root"
-else
-    user_rc_path="/home/${USERNAME}"
-fi
-
-codespaces_zsh="$(cat \
-<<'EOF'
-# Codespaces zsh prompt theme
-__zsh_prompt() {
-    local prompt_username
-    if [ ! -z "${GITHUB_USER}" ]; then
-        prompt_username="@${GITHUB_USER}"
-    else
-        prompt_username="%n"
-    fi
-    PROMPT="%{$fg[green]%}${prompt_username} %(?:%{$reset_color%}➜ :%{$fg_bold[red]%}➜ )" # User/exit code arrow
-    PROMPT+='%{$fg_bold[blue]%}%(5~|%-1~/…/%3~|%4~)%{$reset_color%} ' # cwd
-    PROMPT+='$([ "$(git config --get codespaces-theme.hide-status 2>/dev/null)" != 1 ] && git_prompt_info)' # Git status
-    PROMPT+='%{$fg[white]%}$ %{$reset_color%}'
-    unset -f __zsh_prompt
-}
-ZSH_THEME_GIT_PROMPT_PREFIX="%{$fg_bold[cyan]%}(%{$fg_bold[red]%}"
-ZSH_THEME_GIT_PROMPT_SUFFIX="%{$reset_color%} "
-ZSH_THEME_GIT_PROMPT_DIRTY=" %{$fg_bold[yellow]%}✗%{$fg_bold[cyan]%})"
-ZSH_THEME_GIT_PROMPT_CLEAN="%{$fg_bold[cyan]%})"
-__zsh_prompt
-
-EOF
-)"
-
-# Adapted, simplified inline Oh My Zsh! install steps that adds, defaults to a codespaces theme.
-# See https://github.com/ohmyzsh/ohmyzsh/blob/master/tools/install.sh for official script.
-oh_my_install_dir="${user_rc_path}/.oh-my-zsh"
-template_path="${oh_my_install_dir}/templates/zshrc.zsh-template"
-user_rc_file="${user_rc_path}/.zshrc"
-if [ ! -d "${oh_my_install_dir}" ] && [ "${INSTALL_OH_MYS}" = "true" ]; then
-    umask g-w,o-w
-    mkdir -p ${oh_my_install_dir}
-    git clone --depth=1 \
-        -c core.eol=lf \
-        -c core.autocrlf=false \
-        -c fsck.zeroPaddedFilemode=ignore \
-        -c fetch.fsck.zeroPaddedFilemode=ignore \
-        -c receive.fsck.zeroPaddedFilemode=ignore \
-        "https://mirrors.tuna.tsinghua.edu.cn/git/ohmyzsh.git" "${oh_my_install_dir}" 2>&1
-
-    mkdir -p ${oh_my_install_dir}/custom/themes
-    echo "${codespaces_zsh}" > "${oh_my_install_dir}/custom/themes/codespaces.zsh-theme"
-    # Shrink git while still enabling updates
-    cd "${oh_my_install_dir}"
-    git repack -a -d -f --depth=1 --window=1
-fi
-echo -e "$(cat "${template_path}")\nDISABLE_AUTO_UPDATE=true\nDISABLE_UPDATE_PROMPT=true" > ${user_rc_file}
-sed -i -e 's/ZSH_THEME=.*/ZSH_THEME="codespaces"/g' ${user_rc_file}
-
-echo "Done!"

.devcontainer/non-root-user/Dockerfile

 # Use AlmaLinux 9 base image
 FROM almalinux:9
-
-RUN useradd -m vscode
-
-RUN dnf --best --assumeyes update \
-    && dnf -y install \
-    python3.11 \
-    python3.11-pip \
-    gcc \
-    make \
-    cmake \
-    git \
-    zsh \
-    which \
-    util-linux-user \
-    && dnf clean all \
-    && chsh -s /bin/zsh vscode
-
+LABEL user.name="vscode"
+
+# https://apt.llvm.org/
+RUN dnf --best --assumeyes update && \
+    dnf -y install \
+        python3.11 python3.11-pip \
+        gcc make cmake \
+        git \
+        zsh \
+        which util-linux-user wget sudo passwd \
+        clang lldb lld clang-tools-extra && \
+    dnf clean all
+
+RUN rm /usr/bin/cc /usr/bin/c++ && \
+    alternatives --install /usr/bin/cc cc /usr/bin/clang 100 && \
+    alternatives --install /usr/bin/c++ c++ /usr/bin/clang++ 100 && \
+    alternatives --auto c++ && \
+    alternatives --auto cc
+
+RUN dnf -y install 'dnf-command(config-manager)' && \
+    dnf -y config-manager --add-repo https://developer.download.nvidia.com/compute/cuda/repos/rhel9/x86_64/cuda-rhel9.repo && \
+    dnf -y install cuda-nvcc-12-4 && \
+    dnf clean all
+
+RUN useradd -ms /bin/zsh vscode && \
+    usermod -aG wheel vscode
 
 WORKDIR /workspaces
 USER vscode
 
-RUN python3.11 -m venv /workspaces/.venv
+RUN python3.11 -m venv /workspaces/venv
 
 COPY requirements.txt /workspaces/requirements.txt
 COPY requirements-dev.txt /workspaces/requirements-dev.txt
-COPY .devcontainer/install_zsh.sh /workspaces/install_zsh.sh
-
-RUN /workspaces/install_zsh.sh
-
-RUN echo 'source /workspaces/.venv/bin/activate' >> ~/.zshrc \
-    && source /workspaces/.venv/bin/activate \
-    && pip config set global.index-url https://pypi.tuna.tsinghua.edu.cn/simple \
-    && pip install --upgrade pip \
-    && pip install -r requirements-dev.txt
 
-RUN rm -rf /workspaces/requirements.txt /workspaces/requirements-dev.txt /workspaces/install_zsh.sh
+RUN sh -c "$(curl -fsSL https://install.ohmyz.sh/ohmyzsh/ohmyzsh/master/tools/install.sh)" "" --unattended
+
+RUN echo 'export PATH="/usr/local/cuda-12.4/bin${PATH:+:${PATH}}"' >>~/.zshrc && \
+    echo 'export LD_LIBRARY_PATH="/usr/local/cuda-12.4/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}"' >>~/.zshrc && \
+    source /workspaces/venv/bin/activate && \
+    pip config set global.index-url https://pypi.tuna.tsinghua.edu.cn/simple && \
+    pip install --upgrade pip && \
+    pip install -r requirements-dev.txt && \
+    rm -rf /workspaces/requirements.txt /workspaces/requirements-dev.txt && \
+    echo "hi"
+    # sudo chown vscode:vscode -R /workspaces

.devcontainer/non-root-user/devcontainer.json

@@ -5,5 +5,19 @@
     "context": "../.."
   },
   "runArgs": ["--userns=keep-id"], // needed for podman
-  "remoteUser": "vscode"
+  "remoteUser": "vscode",
+  "postCreateCommand": "",
+  "customizations": {
+    "vscode": {
+      "extensions": [
+        "llvm-vs-code-extensions.vscode-clangd",
+        "vadimcn.vscode-lldb",
+        "ms-toolsai.jupyter",
+        "ziruiwang.nvidia-monitor",
+        "esbenp.prettier-vscode",
+        "ms-python.python",
+        "charliermarsh.ruff"
+      ]
+    }
+  }
 }

.devcontainer/root-user/Dockerfile

 # Use AlmaLinux 9 base image
 FROM almalinux:9
+LABEL user.name="root"
 
 WORKDIR /workspaces
 
-RUN dnf --best --assumeyes update \
-    && dnf -y install \
-    python3.11 \
-    python3.11-pip \
-    gcc \
-    make \
-    cmake \
-    git \
-    zsh \
-    which \
-    util-linux-user \
-    && dnf clean all \
-    && chsh -s /bin/zsh root
-
-RUN python3.11 -m venv /workspaces/.venv
+RUN dnf --best --assumeyes update && \
+    dnf -y install \
+        python3.11 \
+        python3.11-pip \
+        gcc \
+        make \
+        cmake \
+        git \
+        zsh \
+        which \
+        util-linux-user && \
+    dnf clean all && \
+    chsh -s /bin/zsh root
+
+RUN python3.11 -m venv /workspaces/venv
 
 COPY requirements.txt /workspaces/requirements.txt
 COPY requirements-dev.txt /workspaces/requirements-dev.txt
-COPY .devcontainer/install_zsh.sh /workspaces/install_zsh.sh
-
-RUN /workspaces/install_zsh.sh
 
-RUN echo 'source /workspaces/.venv/bin/activate' >> ~/.zshrc \
-    && source /workspaces/.venv/bin/activate \
-    && pip config set global.index-url https://pypi.tuna.tsinghua.edu.cn/simple \
-    && pip install --upgrade pip \
-    && pip install -r requirements-dev.txt
+RUN sh -c "$(curl -fsSL https://install.ohmyz.sh/install.sh)" "" --unattended
 
+RUN source /workspaces/venv/bin/activate && \
+    echo 'source /workspaces/venv/bin/activate' >> ~/.zshrc && \
+    pip config set global.index-url https://pypi.tuna.tsinghua.edu.cn/simple && \
+    pip install --upgrade pip && \
+    pip install -r requirements-dev.txt
 
 RUN rm -rf /workspaces/requirements.txt /workspaces/requirements-dev.txt /workspaces/install_zsh.sh

.devcontainer/root-user/devcontainer.json

 {
+  // example how to make a devcontainer for root user
   "name": "Alma9 (root)",
   "build": {
     "dockerfile": "./Dockerfile",

.vscode/settings.json

@@ -53,6 +53,22 @@
   "python.analysis.inlayHints.variableTypes": true,
   "python.analysis.typeCheckingMode": "strict",
   "python.analysis.extraPaths": ["${workspaceFolder}/python"],
+  "[shellscript]": {
+    "editor.defaultFormatter": "foxundermoon.shell-format"
+  },
   // "docker.host": "unix:///run/user/1000/podman/podman.sock"
-  "dev.containers.dockerPath": "podman"
+  "dev.containers.dockerPath": "podman",
+  "shellformat.effectLanguages": [
+    "shellscript",
+    // "dockerfile",
+    "dotenv",
+    "hosts",
+    "jvmoptions",
+    "ignore",
+    "gitignore",
+    "properties",
+    "spring-boot-properties",
+    "azcli",
+    "bats"
+  ]
 }