update astroid

.pre-commit-config.yaml

 ci:
   autoupdate_commit_msg: "chore: update pre-commit hooks"
   autofix_commit_msg: "style: pre-commit fixes"
+  autoupdate_schedule: monthly
 
 repos:
-  - repo: https://gitlab.cern.ch/pre-commit-hook-mirrors/pre-commit/pre-commit-hooks
+  - repo: https://github.com/pre-commit/pre-commit-hooks
     rev: v5.0.0
     hooks:
       - id: check-added-large-files
@@ -17,25 +18,36 @@ repos:
       - id: requirements-txt-fixer
       - id: trailing-whitespace
 
-  - repo: https://gitlab.cern.ch/pre-commit-hook-mirrors/kynan/nbstripout
+  - repo: https://github.com/kynan/nbstripout
     rev: 0.8.0
     hooks:
       - id: nbstripout
         types_or: [jupyter]
 
-  - repo: https://gitlab.cern.ch/pre-commit-hook-mirrors/pre-commit/mirrors-clang-format
+  - repo: https://github.com/pre-commit/mirrors-clang-format
     rev: v19.1.3
     hooks:
       - id: clang-format
         types_or: [c++, c, cuda]
 
-  - repo: https://gitlab.cern.ch/pre-commit-hook-mirrors/psf/black-pre-commit-mirror
+  - repo: https://github.com/psf/black-pre-commit-mirror
     rev: 24.10.0 # Use the latest stable version
     hooks:
       - id: black-jupyter
 
+  - repo: https://github.com/pycqa/isort
+    rev: 5.13.2
+    hooks:
+      - id: isort
+        name: isort (python)
+
+  - repo: https://github.com/Lucas-C/pre-commit-hooks
+    rev: "v1.5.5"
+    hooks:
+      - id: remove-tabs
+
   - repo: https://github.com/charliermarsh/ruff-pre-commit
-    rev: v0.7.3 # Use the latest version
+    rev: v0.7.4 # Use the latest version
     hooks:
       - id: ruff
         args: ["--fix", "--show-fixes"]
@@ -47,20 +59,20 @@ repos:
         types: [file]
         files: (\.cmake|CMakeLists.txt)(.in)?$
 
-  # - repo: https://gitlab.cern.ch/pre-commit-hook-mirrors/codespell-project/codespell
+  # - repo: https://github.com/codespell-project/codespell
   #   rev: v
   #   hooks:
   #     - id: codespell
   #       args: ["-L", "sur,falsy,gaus,hist,lsit,nd,parms,retur,ue,ba,claus,fo"]
 
-  # - repo: https://gitlab.cern.ch/pre-commit-hook-mirrors/pre-commit/pygrep-hooks
+  # - repo: https://github.com/pre-commit/pygrep-hooks
   #   rev: v
   #   hooks:
   #     - id: rst-backticks
   #     - id: rst-directive-colons
   #     - id: rst-inline-touching-normal
 
-  # - repo: https://gitlab.cern.ch/pre-commit-hook-mirrors/shellcheck-py/shellcheck-py
+  # - repo: https://github.com/shellcheck-py/shellcheck-py
   #   rev: v0.9.0.5
   #   hooks:
   #     - id: shellcheck

.vscode/settings.json

@@ -29,5 +29,7 @@
     "--function-arg-placeholders=false",
     "--compile-commands-dir=build"
   ],
-  "clangd.path": "clangd-17"
+  "clangd.path": "clangd-17",
+  "jupyter.debugJustMyCode": false,
+  "debugpy.debugJustMyCode": false
 }

README.md

@@ -109,7 +109,6 @@ VS Marketplace Link: https://marketplace.visualstudio.com/items?itemName=ms-pyth
 
 ### python formatting
 - pre-commit + vscode extensions
-- install vscode extensions
 - install extensions
 ```
 Name: Black Formatter
@@ -131,12 +130,22 @@ and update `settings.json`
 ```
 - install pre-commit hooks
 ```
-repos:
-  - repo: https://gitlab.cern.ch/pre-commit-hook-mirrors/psf/black
+  - repo: https://github.com/psf/black-pre-commit-mirror
+    rev: 24.10.0 # Use the latest stable version
+    hooks:
+      - id: black-jupyter
+
+  - repo: https://github.com/pycqa/isort
+    rev: 5.13.2
+    hooks:
+      - id: isort
+        name: isort (python)repos:
+  - repo: https://gitlab.cern.ch/pre-commit-hook-mirrors/psf/black-pre-commit-mirror
     rev: 24.10.0  # Use the latest stable version
     hooks:
       - id: black
 ```
+
 ### c++ lint
 - nox + vscode extensions
 - setup nox
@@ -204,8 +213,22 @@ and set
 ### python lint
 #### ruff: pre-commit + vscode extensions
 - install pre-commit
-
+```yaml
+  - repo: https://github.com/charliermarsh/ruff-pre-commit
+    rev: v0.7.3 # Use the latest version
+    hooks:
+      - id: ruff
+        args: ["--fix", "--show-fixes"]
+```
 - install extensions
+```
+Name: Ruff
+Id: charliermarsh.ruff
+Description: A Visual Studio Code extension with support for the Ruff linter.
+Version: 2024.54.0
+Publisher: Astral Software
+VS Marketplace Link: https://marketplace.visualstudio.com/items?itemName=charliermarsh.ruff
+```
 
 #### pylint: nox + vscode extensions
 

cpp/CMakeLists.txt

@@ -2,14 +2,14 @@ add_library(hello SHARED src/hello.cc)
 target_include_directories(
   hello PUBLIC $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/include>
                $<INSTALL_INTERFACE:${CMAKE_INSTALL_INCLUDEDIR}>)
-install(TARGETS hello LIBRARY DESTINATION .)
+install(TARGETS hello LIBRARY DESTINATION _csrc)
 
 add_library(complexf SHARED src/complexf.cc)
 target_include_directories(
   complexf PUBLIC $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/include>
                   $<INSTALL_INTERFACE:${CMAKE_INSTALL_INCLUDEDIR}>)
 target_link_libraries(complexf PRIVATE hello)
-install(TARGETS complexf LIBRARY DESTINATION .)
+install(TARGETS complexf LIBRARY DESTINATION _csrc)
 set_target_properties(complexf PROPERTIES INSTALL_RPATH "$ORIGIN")
 
 # install(DIRECTORY "${CMAKE_CURRENT_SOURCE_DIR}/include/" DESTINATION

notebooks/example.ipynb

@@ -13,6 +13,28 @@
     "print(ms.complex(1, 2))\n",
     "print(np.array([1, 2, 3]))"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import pylint\n",
+    "\n",
+    "pylint.run_pylint([\"myproj/simulation\"])"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from astroid.interpreter._import import util\n",
+    "\n",
+    "print(util.is_namespace(\"myproj\"))"
+   ]
   }
  ],
  "metadata": {

pyproject.toml

@@ -62,5 +62,8 @@ profile = "black"
 disable = [
     "C0114",  # Missing module docstring
     "C0115",  # Missing class docstring
-    "C0116"  # Missing function or method docstring
+    "C0116",  # Missing function or method docstring
 ]
+
+[tool.pylint.MASTER]
+extension-pkg-allow-list = "myproj.simulation"

python/myproj/simulation/__init__.py

-from ._csrc._hello import add, complex
+from ._csrc._hello import add, complexf
 from .core import div
 
-__all__ = ["add", "complex", "div"]
+__all__ = ["add", "complexf", "div"]

python/myproj/simulation/_csrc/CMakeLists.txt

@@ -7,4 +7,4 @@ find_package(pybind11 CONFIG REQUIRED)
 pybind11_add_module(_hello MODULE _hello_python.cc)
 target_link_libraries(_hello PRIVATE complexf)
 install(TARGETS _hello DESTINATION _csrc)
-set_target_properties(_hello PROPERTIES INSTALL_RPATH "$ORIGIN/..")
+set_target_properties(_hello PROPERTIES INSTALL_RPATH "$ORIGIN")

python/myproj/simulation/_csrc/_hello.pyi

+"""
+pybind11 example plugin
+"""
+
+from __future__ import annotations
+
+__all__ = ["add", "complexf"]
+
+def add(arg0: float, arg1: float) -> float:
+    """
+    A function which adds two numbers
+    """
+
+def complexf(arg0: float, arg1: float) -> float:
+    """
+    complex(a,b) = add(a,b) + 2
+    """

python/myproj/simulation/_csrc/_hello_python.cc

@@ -7,5 +7,5 @@ PYBIND11_MODULE(_hello, m) {
   m.doc() = "pybind11 example plugin";  // optional module docstring
 
   m.def("add", &add, "A function which adds two numbers");
-  m.def("complex", &complexf, "complex(a,b) = add(a,b) + 2");
+  m.def("complexf", &complexf, "complex(a,b) = add(a,b) + 2");
 }