e2d6dc9cd Merge commit '58f7461da6e1a3dc2c5094e72b92e1ac560b866b' into feature/pars-gindex
58f7461da Squashed 'subtrees/dictwrapper/' changes from 31a2c74..a9677d6
fc3ae76ad Merge branch 'master' into feature/pars-gindex
03aa7ab0a Merge branch 'feature/parameters-organization' into 'master'
c1655ff21 chore: cleaning
3f214e470 Merge branch 'master' into feature/parameters-organization
76efa2075 Merge branch 'feature/parameters-organization' of git.jinr.ru:dag-computing/dag-flow into feature/parameters-organization
1e457fd2a chore: clean for !25
86ec87c70 chore: clean for !25
555f8cdf4 Merge branch 'feature/pars-gindex' of git.jinr.ru:dag-computing/dag-flow into feature/pars-gindex
e5dee1afb chore: clean for !25
eb40c0cf0 Merge branch 'feature/integrator-sampler' into 'master'
97fcc9990 adding the same type func for input, simplify Integrator type function
05f67b289 adding type function on checks if the output dtype is subtype
20e0b41d8 feat: load_parameters, enable common formatted labels
5a9a5f430 adding description to edges check
bf7819025 move edges check in Array to type function
d12c30819 adding edge consistency check within array, update test
f48dbcb8b adding typefunc on edges consistency, adding edges check in the Array, append -> extend
ae46288ca Merge commit '8b1d453f'
ac12566f7 Merge commit 'fb39e612192594a6c6518c09a72dc781f12ab2a2' into feature/pars-gindex
fb39e6121 Squashed 'subtrees/gindex/' changes from 68bd0d9..45b8f39
663975ede remove extra files from coverage report
1547cec88 adding test of edges equivalence of outputs and inputs in the Integrator
59a814e4d implementing of edges checks in type finctions; update type functions in Integrator and IntegratorSampler; update type function in NodeManyToOne; adding dim field to datadescriptor
553121e13 fix dependences numba <- numpy error
333bd3e25 try to fix dependences bug
333874f12 Merge commit '9eece309'
95d62916b Merge commit 'a42a2714457b64172293df1d0c674fa1b99ae0b3' into feature/pars-gindex
a42a27144 Squashed 'subtrees/gindex/' changes from f2cf624..68bd0d9
5e5627938 Merge commit '1818053b'
7213f2085 Merge commit '61172e91daf352b7f7b0198efc841fc1aa94da35' into feature/pars-gindex
61172e91d Squashed 'subtrees/gindex/' changes from bfee821..f2cf624
ffdfc062b Merge commit '49bf0aae'
1f1c32a9f chore: add gindex symlink
fa1938472 Merge commit '84a041ec'
f839c881c Merge commit '5de63fee'
236f54260 Squashed 'subtrees/gindex/' content from commit bfee821
2d7b0a8ad Merge commit '236f54260d46f50f48b261b13579b300c42b15d7' as 'subtrees/gindex'
df891795e treat edges as List[Output], adding edges arg into Array, update Integrator
5ad52de74 fix: fix numpy 1.23.1 as there is a conflict between numba and numpy 1.24
119d37da3 move buffer to slots
868e4d512 rename FunctionCaller to MethodSequenceCaller
85b55ed46 redesign copy methods of dtype, shape, edges, nodes
b030672ce fix edges stuff
67b2721dd fix usage in trigonometry.py
5a0314e15 renaming of N2One and One2One base nodes
1dbcaea60 fix 2d integration and test, fixing sampler
c2d197490 adding test on left and right alignment; some bug fixes
09010c47f simplify gl sampling
9d786f83b fix GL 2d
24fb88f4d fix bugs in Sampler, fix gl1 sample algorithm, adding the gl1 test
af0fbda7d simplify some node, working on GL integrator test
8d1a55ad0 adding two abstract nodes N2One and OneToOne, implement trigonometry functions
0627e666f fix integration algorithms, adding Cos and Sin functions, update test
92b1cb96a fix type function
40384b221 fix memory allocation, fix 2d sampler, some improvements
a2a40a17c implementing of 2d GL sampling
f9a67a5fb Merge commit '6f45eddc'
daaef5c0e chore: fix unit tests, rename variables to parameters
a432eff8b feat: reorganize GaussianParameters (inherits Parameters) to GaussianConstraint (member of Parameters)
ab2248a56 feat: add marks for Sum and SumSq
8ccd52d95 chore: cleaning
968754df1 feat: add Node._inherit_labels
6a620a2da chore: clean load_parameters from total nuisance
b59644df9 chore: variable cleaning
fb28e9d56 feat: Node, add labels iterator
4fe69f282 feat: NormalizeCorrelatedVars2, inherit labels
2f438b6d2 feat: load_parameters, add nuisance groups
05fd14b9b feat: Node, add `to_dict` for variable-like outputs
d89e86fd1 chore: variable, remove `normvalue` from `to_dict`
9fd013e51 feat: parameters - add a set of normalized parameters
623554677 feat: load_parameters, add individual parameters
7df95ec64 feat: parameters, add single Parameter and GaussianParameter
5366b87b3 feat: Output.seti to set particular field of the output
a77234671 some improvement of type-function in the Integrator for readability
5bbdfa136 implementing of Gauss-Legendre sampling for 1d; some fixes in the Sampler
d529631fe update docstrings, mode naming, and type-function in the Sampler; remove extra check in the Integrator
bb288adb2 fixing named inputs creating in Node.__call__ method; implementing of automatic dimension selection in the Integrator; update the test
c0fa1348e feat: variables, export to dictionary
c7d647ef9 Merge commit 'a5a4baf5'
2bd9deec8 chore: update dictwrapper (MultikeyDict)
157b766fa Squashed 'subtrees/dictwrapper/' changes from fbb3811..31a2c74
41834c1b3 Merge commit '157b766fa218e08ae48afdfa9bb9e5446e97cdf6' into feature/parameters-organization
891e77ce0 start work on IntegratorSampler: design rect and trap methods; adding new type function with check on certain lenght of inputs
a931649c1 Merge commit '21ccc542'
481cafd1a feat: LoadFileWithExt logging
30dcceb5a Merge commit 'addeab8f'
24081d596 feat: LoadFileWithExt logging
c4ec8d88e Merge commit '91cc64ec'
491844d3e feat: LoadFileWithExt logging
c5551dcb7 Merge commit 'a0d6ee58'
ee99f9f4a feat: LoadFileWithExt logging
49d95257a chore: clean logger
a4c8a24bb Merge commit 'da14a0e1'
ba6d5690b chore: load_parameter, improve validation
ddee5eeda small codestyle updates; change mode:str argument into dim:int in the Integrator with some improvements
0870742d2 Merge commit 'cf3ba427'
84dbde76d Squashed 'subtrees/dictwrapper/' changes from a3ea5a2..fbb3811
e1e993a76 Merge commit '84dbde76ddc81fa5145a01bd07fb81b9904f076a' into feature/parameters-organization
d15ea2b0c Merge commit '5180dd6f'
964f59a07 chore: variable → parameter
8d32759fc feat: load_variables, support lists
1bdb5f93f Merge commit '698b9e93'
60baeb4f1 feat: load_variables, accept also contextlib.Path
8020c549e Merge commit '1d3d9e38'
625ac07e5 feat: LoadFileWithExt, optionally update the dictionary
8db818385 feat: load_variables, configure sub path
c957a88f0 Merge commit 'ee7b5a8c'
0b115a369 feat: LoadFileWithExt, optionally update the dictionary
8b7c82865 Merge commit 'ab5c2031'
c4b1b1285 feat: LoadFileWithExt, optionally update the dictionary
b829d99ba Merge commit 'c6199779'
290035839 chore: Parameters, properly treat kwargs
e8a898040 feat: load_variables, configure sub path
a2af35113 feat: bundle load_variable `state` option
a39073df6 feat: Parameter/GaussianParameter, `__slots__`, `free`/`constrained`/`fixed`/`variable`/`correlated` properties
d7974b2af feat: load_variables, enable loading the files
7646352f9 feat: more schema modules
e874df2c1 feat: graphviz add mid-nodes to handle single output to multiple inputs connection
80f2c3d0c update conftest.py
432ce4de2 Merge commit 'e758008b'
63525278a feat: bundle load_variable `state` option
b6dc9a47f feat: Parameter/GaussianParameter, `__slots__`, `free`/`constrained`/`fixed`/`variable`/`correlated` properties
289b18f28 feat: load_variables, enable loading the files
4b237e30a feat: more schema modules
249aa720a feat: graphviz add mid-nodes to handle single output to multiple inputs connection
d356a1177 Merge commit 'ec250717' as 'subtrees/dagflow'
06e5de799 omit subtrees from coverage report
5bd12830e feat: load_variables, enable loading the files
7ace3d4ff feat: more schema modules
5932df691 feat: graphviz add mid-nodes to handle single output to multiple inputs connection
f3d467271 Merge branch 'fix/issue-32' into 'master'
33e593695 remove Node.logger creation
fa882cee9 [issue: #32] fix extra logger creation
ab319f3da Merge branch 'feature/parameters-organization' into 'master'
d59e5e0f7 Squashed 'subtrees/dictwrapper/' changes from 0a60e21..a3ea5a2
ceab5329c Merge commit 'd59e5e0f715744779a1f870ed4fe5cabe57b45b4' into feature/parameters-organization
d62b87065 chore: fix issues from !22
f79da2c70 chore: fix errors (unit tests)
5178d6bc2 feat: load_variables bundle
77bcffceb chore: dagflow.tools → dagflow.iter
9888c5b94 feat: tools.schema.NestedSchema to work with nested configurations
b7fc24568 Merge branch 'master' into feature/parameters-organization
df4285d43 fix: NormalizeCorrelatedVars2, setup agreement on how to update when sigma/central are modified
ca8596ba8 chore: graphviz do not add empty status bar
5e123aa23 draft: variables, initialize nodes
340f730f1 feat: graphviz, print ninputs
5967d6003 chore: remove `undefined`
9a88d0fa8 feat: Node._label: str → dict
ac2e758e3 draft: variables, finalize labels validation
86aef7a4d Merge branch 'feature/data-descriptor' into 'master'
5efa314ef keep only Tuple[EdgesLike]
d2bcba7a3 redesign DataDescriptor
ffa2161c9 draft: variables cfg reading
90ac89928 draft: complete schema for variables
a0869b0ee [issue: #31] Adding DataDiscriptor field into Input and Output and update other sources and tests
0a2c2d837 [issue: #31] design DataDescriptor and Axis classes, adding new types
d01d7f301 draft: start drafting the loader for variables
956a8b5a5 requirements: add schema
176be49d9 Merge branch 'feature/new-nodes' into 'master'
b2beb86d7 test: check_inputs_square_or_diag (SumMatOrDiag)
555b74535 fix: check_inputs_square_or_diag
bc99c12da Merge branch 'feature/new-nodes' into 'master'
ea251af49 chore: cleaning for !19
bb5afe83f subtree: link
b74169ffc Squashed 'subtrees/dictwrapper/' changes from 16e0834..0a60e21
0d43f410e Merge commit 'b74169ffc0a88d1723fa7b7ace28a193b39eddab' into feature/parameters-organization
ee612f7ef Merge branch 'feature/new-nodes' into feature/parameters-organization
c4c45bc01 feat: SumMatOrDiag node
b06c59042 chore: switch to cacheing njit
e2b54777a feat: graphviz, better data handling during exceptions
c56a3271a feat: check_inputs_square_or_diag
bd3a1dd76 chore: cleaning
697fd9d66 chore: NormalizeCorrelatedVars2, avoid outdated values
97087e9f0 feat: ElSumSq - elementwise sum of squares
aee3d5d8a feat: check_inputs_same_dtype
4fde39fb5 feat: SumSq node
8b2071023 test: Sum
871016fac chore: cleaning
0948884ce chore: Sum/Product, check equivalence
b15055fbe feat: input.get_data_unsafe
2684661bf feat: typfunctions, handle for AllPositionals
996146bf0 Merge branch 'feature/parameters-norm' into 'master'
b1f5cb85c chore: revert non-mutable arguments
5ee7ceb1f chore: cleaning
083c20026 Add dictwrapper as a subtree
f6a491e52 Squashed 'subtrees/dictwrapper/' content from commit 16e0834
675e04a81 Merge commit 'f6a491e5262e3f957fb1a2b01dcbada5d98843c3' as 'subtrees/dictwrapper'
f448816b8 fix: test for variable
ef67b7d8b feat: variable, add 'cor' mode (sigma, correlation as inputs)
29bb594ab fix: Node, fix positional/keyword
9a0562700 feat: finalize GaussianParameter
a2c477196 feat: node CovmatrixFromCormatrix
7257e2b68 test: NormalizeCorrelatedVars2, check immediate computation
2bccd70ed feat: graphviz data justification
ea570878e deprecate: SharedInputsNode
6ab0ad347 test: NormalizeCorrelatedVars2
37382a16d fix: minor
4eaa8de37 fix: unit test
2573160ef Merge branch 'master' into feature/parameters-norm
6bdb6d66d chore: check_has_input→check_has_inputs
1e2160fb2 chore: check_has_input→check_has_inputs
ce05077f7 chore: fix SharedInputNode
f2a29aae2 Merge branch 'master' into feature/parameters-norm
6044ee5c3 feat: NormalizeCorrelatedVars2 to provide correlatednormalized conversion (two way)
6fbc10f6a chore: clean taint propagation
95e245593 feat: graphviz, status information
7de1277ec Merge branch 'feature/integrator-backup' into 'master'
005725f68 fix of mode arg
4f8c2ce9c adding 3x3 test
51fb39ed8 split `orders` onto `ordersX` and `ordersY`, introduce `mode` of integration, improving checks, some redesign of Integrator
38d9b62c1 chore: graphviz view
fc1299d12 test: more tests on graph closure
57af167ba test: variables
5c97fca1a feat: variable, finalize 2way correlateduncorrelated variables calculation (draft)
19de98de4 feat: graphviz add show_data_summary flag
030e45c70 feat: Node.close() add `together` argument to process co-dependent nodes
8afa00f7c update requirements.txt
a3c3a94ae adding integrator tests and comments; improving integrator; renaming and redesigning check_has_inputs -> check_has_input to keep common code style
d641270ae Merge branch 'master' into feature/parameters-norm
20e712955 fix: make node iterate all the inputs on recursive operations, improve logging
1c91957f7 fix missing_input_handler calling with zero outputs, adding check_has_input type-function, remove binning reduction, fix tests
5e3352882 feat: graphviz, add option to show data
966032138 test: Array's graph
dc77fccc3 fix: Output reallocation, protect from None
3ecf89b20 fixing integrator algorithms: right output dimensions, works with integration into one bin; fixing and imporoving type function; fix and improve test
7f911c1ff simplify buffer allocation
a26417a75 upgrade checks in Integrator, update type function
fcbae0e01 adding type hints and docstrings
b6a12769c implement 2d integration within Numba
8c68d00b9 adding 2d integration, update test
de46a4dcf some fixes in Integrator and start work on 2d version
6f58a61fb [issue: #29] implement the `Integrator` node using `numpy.trapz` and add the test; change data getter in `Output`: remove `touch` from unsafe getter and move it to the ordinary getter; change output data getter in `Input`: if the `Node` is being evaluated, trigger deep evaluation, else get the data directly; adding new type function; small fixes
55034e134 Merge branch 'master' into feature/parameters-norm
cdf7597ef Merge branch 'feature/shared-input-taint' into 'master'
5da3b1190 chore: imports
e3c1104c7 chore: fix unit tests
5d58386d4 test: GaussianParameters
785b02829 feat: show exceptions in graphviz plots
e1b09ce4e feat: mark for Cholesky
5f58b9c01 feat: custom marks for Array
1a98ade40 feature: add Parameters/GaussianParameters classes (draft)
76e2cf6ef chore: clean tests
5d6393420 chore: marks
aff1b29ef feature: node/graphviz add short mark for the node type
c0664e57f feat: close Array, if it owns the buffer
4a98d680d chore: compatibility with Python <3.10 (strict zip)
69adecee6 chore: style
6260cd918 test: NormalizeCorrelatedVars
c3eea094c feat: complete NormalizeCorrelatedVars, forward and backward
1ae2638ec feat: typefunctions, add `check_inputs_multiplicable_mat`
f214d9cd3 test: test Cholesky with different dtypes
181fa22a3 feat: Cholesky, support 1d inputs (diagonal)
160253bb9 feat: graphviz, information on outputs and inputs
e36ba5ec4 feat: typefunction to check squareness (or diagonals)
3ef78fb7f chore: remove obsolete `EdgeContainer.__dir__`
d5e53cc9b test: Cholesky
539cc9587 feat: `check_input_square` type function
5ebff3323 fix: MissingInput formatting
3406915c6 feat: add Cholesky decomposition
90caae05d draft: Cholesky/NormalizeCorrelatedVars nodes
e4d732493 feat: clever inputs/outputs enumeration (hide '_00')
19d07dfef Merge branch 'master' into feature/shared-input-taint
a6b1525b9 Merge branch 'feature/scalable-typefunctions' into 'master'
d13afb17c chore: use f-strings in `Edges`
3465b6703 Merge branch 'feature/scalable-typefunctions' into feature/shared-input-taint
420dbf2f6 chore: update the usage of typefunctions
11e956e95 feat: make typefunctions scalable
f4c787725 feat: add `Edge.iter` and `Edge.iter_data`
db81ba2cc feat: add `Edges.iter_data()`
018e98c2a chore: Merge `SettableOutput`→`Output`, `VariableArray`→`Array`
3a423dda5 feat: SharedInput, taint parents
291d5631e chore: rename `Node.post_allocate()` to `Node._post_allocate()`
9720977b0 chore: clean VariableOutput
cdbf2e432 feat: Array, add 'store_weak' - reallocatable storage in Array
4d20332c0 feat: SharedInputNode, keep the list of callers
153ceeb64 feat: add caller argument four `Node.touch()`, add `Node._on_touch()` hook
27218f9b8 test: SharedInputNode
3454f708e test: SharedInputNode
fda7e0f9b Merge branch 'feature/type-functions-update' into 'master'
4c3612691 fix input dimension and type checks
5efab1d0b adding new type-function with dtype and shape checking for all the inputs
559997523 adding checks of input dimension and dtype
f0b5d05a4 rename one check and fix annotations
a2dfda6ee update TODO.md
209d578da [issue: #28] move type functions into a separate file and update the lib
ef76a8d8e update TODO
41e056b72 Merge branch 'updates' into 'master'
912e27817 fix: MR !12
cd334caf4 fix: MR !12
f7bce2b52 chore: Output, keep data continuity during reallocation
ea82aa5fa chore: cleaning
72392fc64 chore: test all View combinations
50b6cad70 chore: clean Views
5d5aa444a chore: graphviz, survive disconnected graphs
5e33fc183 chore: rename `owns_data` to `owns_buffer`
e9c7d4d77 chore: update View to catch reallocations
a037ff5e6 feat: Output._forbid_reallocation: bool to handle allocating inputs
8196ab946 feat: View, catch connections to allocating inputs
b8508f5f9 test: extend unit tests for View/SharedInputsNode
570ed6bbb feature: Node.get_data() to return 0th data if no arguments are passed
c42492e0b chore: graphviz, dpi, enumeration
4b032f90d chore: Graph, rerize exceptions (context)
9be9d4dfc chore: Edges, len/index methods
17124e4aa chore: add coverage.json to .gitignore
5e665a57b fix: fix unit tests on older Python
0ef5bf10c chore: clean View
b611f9968 feature: add View transformation
fbad37590 chore: cleaning
ac0ec8edc Merge branch 'updates' into parameters
e7e49a7c5 chore: clean SharedInputNode
a42fe76aa feature: ViewConcat node, foces inputs to be allocated in the same continuous buffer
add0216b2 feature: graphviz, show numbers of positional inputs/outputs (if >1)
7b1e8f98e chore: clean up allocation for Inputs/Outputs
522503663 chore: unit test for Array
80df55aaf feature: Array now supports modes, 'fill' and 'store'
dfaa7270d fix CI
603a4a69a exclude all standard packages from coverage and leave only the project path
cb7cb655f chore: unit test for ViewConcat
74820c6fe fix coverage report name
a26c7aec9 adding coverage to CI
422ed5503 Merge branch 'updates' into parameters
dd375f356 Merge branch 'master' into updates
b546adebb chore: remove coverage report for command line
663549f19 chore: remove coverage report for command line
6701b8834 chore: unit test for Array
01509574c feature: Array now supports modes, 'fill' and 'store'
140586f79 Merge branch 'master' into parameters
38101ccbc chore: clean Input allocation
8aaae2e65 Merge branch 'chore/function-switch' into 'master'
4d9221b5f avoid default mutable arg and update codestyle
cd3ee46ba avoid default mutable arg and update codestyle
2e045f456 Merge branch 'chore/function-switch' into parameters
0d9298b66 chore: minor
83dcb0ecd chore: update ViewConcat
58d325c11 Merge branch 'chore/function-switch' into parameters
50db794c0 feature: Node.pre_allocate() hook
77dae1a6d chore: update Arra/VariableArray
8229cfefd chore: organize Output's data allocation
4eb9bab6d chore: update unit tests to match recent state
88d8305e3 chore: clean Node
d2df4b62c feature: MissingInputHandler - output_kws
e24daa954 chore: organzie EdgesContainer
01ae36ea2 fix opening: now open not parents but child nodes; fix the test
7f93ec300 Adding check on inputs length into the WeightedSum, some info in TODO
6a3e32e79 rename evaluating -> being_evaluated
3575a3a08 Merge branch 'chore/function-switch' into parameters
cedcbdaaf fix funciton in WeightedSum
95c331901 rename evaluated to evaluating
e074a6492 Redesign WeightedSum; fix adding inputs and outputs to node; update TODO
eb20a4c47 remove print and avoid direct data usage
b83644d82 Merge branch 'chore/function-switch' into parameters
14f54b280 Merge branch 'chore/function-switch' of git.jinr.ru:dag-computing/dag-flow into chore/function-switch
8ec645973 fix: Node.get_data
9b578a52d chore: cleaning
c176740be fix: EdgesContainer, iterate positionals
165c90c84 feat: add `ViewConcat` draft
3c79fb7ac chore: cleaning
fbce31f98 chore: remove `ArrayOnInput`
0093d8cd9 remove recursive key from input.allocate, remove debug info from lib, remove some comment
7f57eb283 update codestyle, fix get_data_unsafe, rename recursivly -> recursive
172f64bd2 another try to fix coverage report
72579a13d adding coverage format to fix CI
e0bbbf03d try to find coverage report
2fcf1d994 Merge branch 'feature/coverage' into 'master'
da4f92694 fix CI
1487640ba adding badges
7aa7b98db chore: `View.post_allocate`
f38089c9c Merge branch 'chore/function-switch' into parameters
15595a24c fix: update types and allocate data on recursive close
bc38adcd0 chore: missing import (`output`)
a6bf3a979 Merge branch 'master' into chore/function-switch
7f91ec860 fix: `EdgeContainer.__len__` to return the number of positional elements
a27d3c313 adding coverage reports and update requirements
dee866a72 remove checks in input, adding unsafe data getter into output, adding skeleton of post_allocate, etc
45aa55a99 adding function switching, update WeightedSum, adding the test
d2b5f5c87 rempove extra import
5425e224a adding recursive closing option and remove duplicate methods, adding closing and opening exceptions classes and insert into closing procedure, adding test on closing of two graphs and test on non-recursive closing, clean some extra imports, update codestyle
eedae3427 Merge branch 'parameters' into feature/View
5da39c8ab Merge branch 'master' into parameters
15c92b4a3 Merge branch 'parameters' into feature/View
e60b4c4d7 Merge branch 'master' into parameters
6f1d1243c test: `VariableArray` unit test
02ab280bf feat: `SettableOutput` an output instance with an ability to set data
31cf13e4c feat: `EdgeContainer._replace` method to replace one edge with another
9e8de2d36 chore: cleaning
3e3294146 chore: finalize EdgesContainer._replace
162a2c0c0 Merge branch 'master' into parameters
0806f2be5 Merge branch 'master' into parameters
9a3eee2fd Merge branch 'update-to-data-preservation' into 'master'
476098d02 a lot of refactoring, cancel previous shift operators changes, improving...
703f25820 chore: use List[] instead of list[] for type hinting so dagflow works on the older python
c9abadaf2 test: update test View
7fa857e06 chore: input remove Input.child_output closure
ce4fca4a5 chore: View, use np.view
4e3c52c33 Merge branch 'update-to-data-preservation' into feature/View
e81e0cbef chore: bulk rename setted → set
d0a2d7452 chore: remove ReferenceType
51b5b00b2 chore: remove ReferenceType
23b66ec01 chore: clean Input/Output constructors, remove kwargs
a7c8e0054 chore: separate TypeVars into distinct file types.py
31f37eb98 feature: add Output.parent_input
d8c4d557e chore: bulk rename Output.inputs to Output._child_inputs
5236c5e39 chore: bulk rename Input.output -> Input.parent_output
8d9fd7879 chore: bulk rename parent to child
e24f4cea3 draft: add ArrayOnInput class
a9b458ab5 chore: type hinting (output/input)
c681d1d75 chore: clean unit test for View
66d5eccec test: add unit test for Array
31b9a6ff3 Merge branch 'feature/View' into parameters
af88cc8a4 feature: add View transformation
6045cdd9c draft: Parameter/GaussianParameter objects
1fc075ef4 Merge branch 'update-to-data-preservation' into parameters
4af004bfa chore: unpack lib.py into lib/ module
0cd9ee99d chore: lib.py->lib/
f20019f7e chore: unpack lib.py into lib/ module
6beb1395e chore: rename test/graph to test/core
920d9c06b test: test SettableOutput, parent invalidation
2bb3fbe35 chore: Output type hinting
742129809 chore: clean Node.invalidate_*
bedb96100 feature: Input.parent_node
67e0cf8c7 Merge branch 'update-to-data-preservation' into parameters
44046d9c1 fix: enable ipython tab-completion for Outputs/Inputs
574329eb4 test: VariableArray
f21debc31 feature: SettableOutput, invalidate parents
c7f9455ee chore: clean Node.invalidate methods
ee93a7551 Merge branch 'update-to-data-preservation' into parameters
69f6f16e8 fix: missing import Optional
e423d14c3 feature: Output.take_over(other) to replace an output instance
88f5414e3 test: unit test for SettableOutput
860acf4e9 test: add test for `VariableArray`
319e9d145 chore: clean `Array` and `VariableArray`
61c1a97eb feature: create `SettableOutput`
a24b92512 chore: separate TypeVars into distinct file types.py
1652724b2 tests: rename `test.py` as it is not seen by pytest by default. Comment test7/test8.
61afb91db chore: hint members (Legs)
a86554a3e chore: replace Union with optional
e07b67c1a Merge branch 'update-to-data-preservation' of git.jinr.ru:dag-computing/dag-flow into update-to-data-preservation
c83bc929c fix artifacts
7cd5a7a1b restrict CI for all branches except master, development and MR
e23c2f52e feature: add Parameter and GaussianParameter objects
81f342189 feature: add VariableArray transformation
0944f94c5 feature: optimize Array
1866ffbb3 chore: move FunctionNode and StaticNode into separate file
9bf7e220c chore: avoid cyclic import due to type checking - add TypeVars to input.py
c762910aa chore: remove obsolete if `__name__=='__main__'` from unit tests
470761171 chore: add requirements.txt
b44dab6d6 chore: remove obsolete `__future__.print_function`
389b0ce5f chore: remove `source.fish`
c5e1ce94f adding images from master
a2a9f8480 adding output path to CI-script
d76796843 fix error with import
fe848e491 adding CI script
796d19ba2 Merge branch 'feature/graph-closure' into 'update-to-data-preservation'
f89492a3a Merge branch 'feature/graph-closure-other-algorithm' into 'feature/graph-closure'
690d238f2 fixing all errors, bugs, tests, logging, memory allocation and other updates
baef26a6b fixing closure procedure; fixing test; adding some logging; other fixes
c04af02a5 redesign new closure algorithm
5750e0486 some updates small updates
40978ece1 rename iinput to parent_output
bba84a5b7 update type and shape functions; update TODO; adding Concatenation node
a75a6d9ce update logging, adding evaluated result to logging output, codesrtle updates
3292f0477 fixing the type and shape functions; adding binding from dict; update TODO; remove some unused code, adding comments and logging output
860defc20 fixing type and shape functions, fixing libs and tests, update TODO
450197848 moving of prints to the logging is finished, fix logging duplicates, some other fixes
876dd99dd adding logger (work in progress), adding change of the test path to the `test`, some other updates
d36acdbae fixing preallocation, update types and shapes, fixing examples and hooks
8e3cdb68d Adding memory allocation, type and shape, other changes
05d074a11 new update
eb21461fa remove comments
a5c61684d Fixing closure procedure, some other updates
4a4bd4aec Implementing the closure functional, fixing classes, methods and tests
08e163882 Adding exceptions; implimenting signature checking at an input connection (non-critical) and a function evaluation (critical), writing test on these hooks; update WeightedSum
056cde65a implmenting WeightedSum, redesigning undefined classes, update TODO, new examples.
4b0b61945 Adding NOTE to the NodeClass decorator, create working simple transformations, update example, delete pdf and png, update TODO, some codestyle updates
4312e63ec a lot of refactoring, cancel previous shift operators changes, improving codestyle, renaming corresponding_output -> iinput, adding TODO.md, etc
87699487b refactoring the imports, some codestyle fixes and updates
9af16514d Update README.md
8c71b19bc Add example animation
982e76840 Add valid/invalid status
f46a6bb45 minor
1059f2819 Pass taint(force) flag
811fad864 Make touching inputs before evaluation of a static node optional
7a666a96e Catch exceptions
297fe9104 minor
e1be5251d Add NodeGroup and move part of the functionality of Graph there Setup NodeGroup iterator (inputs) and >>/<< operators
6ad9c9b01 minor
cdb648f2f minor
121efef89 Add RepeatedOutput
e70265934 Fix MemberNode wrapper
0cf952ee3 minor
489b575b3 minor
2a87435fa Split MemberNode in separate file and add master class
01fc12020 Add FunctionNode
b991237d5 Fix MemberNode
7e87618ee minor
38bdfdc9a Add MemberNode and StaticNode node definitions
208a810ba minor
1d5134037 minor
b9fa93f71 Clean staticmethod/classmethod distinction
e9e1ba95d testing
f3a744dfb Add test/example with classes
4ba0c396e Update README.md
fc99803bf Update README.md
7dc002b24 minor
32cd851e0 Merge branch 'master' of git.jinr.ru:maxfl/dag-flow
ef70cc8da Example
29860e79f Add README.md
5600fee96 Add some doc lines
446767c98 Use properties
24512eb59 Python2 compatibility
f6b5d74fa minor
9b6842604 Fix deep iterators
22c894aab Refactor deep iteration, still does not work
103be5127 Make >>/<< operators work on unconnected inputs only
9b335b90f Add missing inputs handlers
054b3eff8 Add handlers for missing inputs
e68b035e9 Update NodeFunction to accept lists of names for inputs/outputs
b9d445ae8 Finalize first version of the function wrapper. Add layered printing
288445d9f Clean default function definition
2fb6cda45 Make correct module based import
fb9355611 Done refactoring
8614b182f Refactor and split
8e19b0a98 minor
2e3de437a minor
0bd573a91 Finalize binding
d5315b908 Update demostration: add labels
a9d966ade minor
e31a109df draft
f3986dbeb minor
8f8863fa8 update
4e6123432 minor
b3c6997ec update
5bde738d9 update
6ca516b71 update
3f9a20cc6 update
fa90842a6 Add Node/Input/Output/Graph
fcd76b72b Initial
REVERT: d42b4ddc chore: rename GNIndex.values to GNIndex._indices
REVERT: a4893e0f chore: rename GNIndexInstance.instances to GNIndexInstance.indices
REVERT: d7459163 chore: GNIndex(Instance), protect kwargs of copywith
REVERT: 0d1424ea fix: load_parameters index estimation
REVERT: aa62aa24c data: clean labels
REVERT: 734e5a3b model: add baselines
REVERT: 226ee425 feat: load_parameters, enable common formatted labels
REVERT: 8c53d515d data: finalize baselines
REVERT: 01573f80 model: add index for isotope
REVERT: 015912a23 data: baselines, versions, readme
REVERT: 12a63e32 test: add output
REVERT: fe148ffd Merge commit '8b1d453f'
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REVERT: e562885a feat: add index
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REVERT: e5a1b024 chore: add gindex symlink
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REVERT: a2ed3742 feat: reorganize GaussianParameters (inherits Parameters) to GaussianConstraint (member of Parameters)
REVERT: 8b8aa2aff data: labels
REVERT: a9d5514c chore: cleaning
REVERT: 55dd4470 feat: dayabay_v0, test nuisance
REVERT: a59698d0 feat: add marks for Sum and SumSq
REVERT: d667e727 chore: cleaning
REVERT: 22dc8426 feat: add Node._inherit_labels
REVERT: aec88088 chore: clean load_parameters from total nuisance
REVERT: f7a9ebab9 data: fix energy resolution uncertainty (to percent)
REVERT: 11dba025 feat: add Graph to dayabay_v0
REVERT: 083de9dc chore: variable cleaning
REVERT: 033f3050 feat: Node, add labels iterator
REVERT: 9a59e93e feat: NormalizeCorrelatedVars2, inherit labels
REVERT: 669a52fd chore: dayabay_v0
REVERT: f1b012cb feat: load_parameters, add nuisance groups
REVERT: 7aa38feb feat: Node, add `to_dict` for variable-like outputs
REVERT: 7706adc5 chore: variable, remove `normvalue` from `to_dict`
REVERT: 6da14e5e chore: remove obsolet links
REVERT: 7201cf27 feat: parameters - add a set of normalized parameters
REVERT: b4214219 chore: update parameters location
REVERT: d0a989e2 feat: load_parameters, add individual parameters
REVERT: 482d068d feat: parameters, add single Parameter and GaussianParameter
REVERT: d452b411 feat: Output.seti to set particular field of the output
REVERT: 352fcb13 feat: variables, export to dictionary
REVERT: 412b3246 feat: parameters printer (WIP)
REVERT: b8f445aa chore: dictwrapper→multikeydict
REVERT: a5a4baf5 Squashed 'subtrees/dagflow/' changes from 481cafd1..2bd9deec
REVERT: b31cf791 Merge commit 'a5a4baf5'
REVERT: 376149bf test: fix tests
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REVERT: 51b85750 model: nprotons
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REVERT: 050305a9 model: storage
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REVERT: b52629c7 Merge commit 'cf3ba427'
REVERT: ee5ed551 chore: naming
REVERT: f94b9338d data: names
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REVERT: f563d32b Merge commit '5180dd6f'
REVERT: 08aeef8b model: energy per fission
REVERT: 5c5a8f8b4 data: cleaning
REVERT: c880b474b data: mean energy per fission
REVERT: 14b7bae9 mode: Daya Bay v1 (recent changes)
REVERT: 489eb22a9 data: latex labels
REVERT: 6ef8eae0 Merge branch 'main' of git.jinr.ru:dag-computing/dayabay-model
REVERT: bf89cba0 Merge commit '698b9e93'
REVERT: f3533b38 feat: dayabay, paramter paths
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REVERT: e134cffb feat: dayabay, paramter paths
REVERT: 30fec8ac Merge commit '1d3d9e38'
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REVERT: 30c9f99b Merge commit 'ab5c2031'
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REVERT: 4f842baa chore: pprint
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REVERT: bcd60921 Merge commit 'c6199779'
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REVERT: 23c81abc Merge commit 'e758008b'
REVERT: 978bcae8 fix artifacts path in the CI; adding empty conftest to fix simple run of test
REVERT: 2bcece354 data: update parameters
REVERT: 1b27ec23 test: conftest
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git-subtree-dir: subtrees/dagflow
git-subtree-split: e2d6dc9cdc20b0ba2b08b50fd6aad45943945f87

d42b4ddc chore: rename GNIndex.values to GNIndex._indices
a4893e0f chore: rename GNIndexInstance.instances to GNIndexInstance.indices
d7459163 chore: GNIndex(Instance), protect kwargs of copywith
0d1424ea fix: load_parameters index estimation
aa62aa24c data: clean labels
734e5a3b model: add baselines
226ee425 feat: load_parameters, enable common formatted labels
8c53d515d data: finalize baselines
01573f80 model: add index for isotope
015912a23 data: baselines, versions, readme
12a63e32 test: add output
fe148ffd Merge commit '8b1d453f'
8b1d453f Squashed 'subtrees/dagflow/' changes from 95d62916b..ac12566f7
e562885a feat: add index
9eece309 Squashed 'subtrees/dagflow/' changes from 7213f2085..95d62916b
d7239cfa Merge commit '9eece309'
1818053b Squashed 'subtrees/dagflow/' changes from 1f1c32a9f..7213f2085
99268651 Merge commit '1818053b'
e5a1b024 chore: add gindex symlink
49bf0aae Squashed 'subtrees/dagflow/' changes from 2d7b0a8ad..1f1c32a9f
eefbb3aa Merge commit '49bf0aae'
84a041ec Squashed 'subtrees/dagflow/' changes from 5ad52de74..2d7b0a8ad
57f0dcb0 Merge commit '84a041ec'
5de63fee Squashed 'subtrees/dagflow/' changes from daaef5c0..5ad52de7
53e4d165 Merge commit '5de63fee'
b3f85160 test: do not create output files
fc038f73 Merge commit '6f45eddc'
6f45eddc Squashed 'subtrees/dagflow/' changes from 2bd9deec..daaef5c0
a2ed3742 feat: reorganize GaussianParameters (inherits Parameters) to GaussianConstraint (member of Parameters)
8b8aa2aff data: labels
a9d5514c chore: cleaning
55dd4470 feat: dayabay_v0, test nuisance
a59698d0 feat: add marks for Sum and SumSq
d667e727 chore: cleaning
22dc8426 feat: add Node._inherit_labels
aec88088 chore: clean load_parameters from total nuisance
f7a9ebab9 data: fix energy resolution uncertainty (to percent)
11dba025 feat: add Graph to dayabay_v0
083de9dc chore: variable cleaning
033f3050 feat: Node, add labels iterator
9a59e93e feat: NormalizeCorrelatedVars2, inherit labels
669a52fd chore: dayabay_v0
f1b012cb feat: load_parameters, add nuisance groups
7aa38feb feat: Node, add `to_dict` for variable-like outputs
7706adc5 chore: variable, remove `normvalue` from `to_dict`
6da14e5e chore: remove obsolet links
7201cf27 feat: parameters - add a set of normalized parameters
b4214219 chore: update parameters location
d0a989e2 feat: load_parameters, add individual parameters
482d068d feat: parameters, add single Parameter and GaussianParameter
d452b411 feat: Output.seti to set particular field of the output
352fcb13 feat: variables, export to dictionary
412b3246 feat: parameters printer (WIP)
b8f445aa chore: dictwrapper→multikeydict
a5a4baf5 Squashed 'subtrees/dagflow/' changes from 481cafd1..2bd9deec
b31cf791 Merge commit 'a5a4baf5'
376149bf test: fix tests
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5c4f8ba6 Merge commit '21ccc542'
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97d3a398 Merge commit 'addeab8f'
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7147e8ad Merge commit '91cc64ec'
a0d6ee58 Squashed 'subtrees/dagflow/' changes from ba6d5690..ee99f9f4
1086df0f Merge commit 'a0d6ee58'
51b85750 model: nprotons
5676f99d6 data: nprotons
da14a0e1 Squashed 'subtrees/dagflow/' changes from e1e993a7..ba6d5690
d1e36850 Merge commit 'da14a0e1'
050305a9 model: storage
cccff281d data: eres, thermal power
cf3ba427 Squashed 'subtrees/dagflow/' changes from 964f59a0..e1e993a7
b52629c7 Merge commit 'cf3ba427'
ee5ed551 chore: naming
f94b9338d data: names
5180dd6f Squashed 'subtrees/dagflow/' changes from 60baeb4f..964f59a0
f563d32b Merge commit '5180dd6f'
08aeef8b model: energy per fission
5c5a8f8b4 data: cleaning
c880b474b data: mean energy per fission
14b7bae9 mode: Daya Bay v1 (recent changes)
489eb22a9 data: latex labels
6ef8eae0 Merge branch 'main' of git.jinr.ru:dag-computing/dayabay-model
bf89cba0 Merge commit '698b9e93'
f3533b38 feat: dayabay, paramter paths
698b9e93 Squashed 'subtrees/dagflow/' changes from 625ac07e..60baeb4f
e134cffb feat: dayabay, paramter paths
30fec8ac Merge commit '1d3d9e38'
1d3d9e38 Squashed 'subtrees/dagflow/' changes from 0b115a36..625ac07e
6bd149a1 Merge commit 'ee7b5a8c'
ee7b5a8c Squashed 'subtrees/dagflow/' changes from c4b1b128..0b115a36
30c9f99b Merge commit 'ab5c2031'
ab5c2031 Squashed 'subtrees/dagflow/' changes from e8a89804..c4b1b128
4f842baa chore: pprint
c6199779 Squashed 'subtrees/dagflow/' changes from 63525278..e8a89804
bcd60921 Merge commit 'c6199779'
93b9709c Merge branch 'main' of git.jinr.ru:dag-computing/dayabay-model
e758008b Squashed 'subtrees/dagflow/' changes from 5bd12830..63525278
23c81abc Merge commit 'e758008b'
978bcae8 fix artifacts path in the CI; adding empty conftest to fix simple run of test
2bcece354 data: update parameters
1b27ec23 test: conftest
ec250717 Squashed 'subtrees/dagflow/' content from commit 5bd12830
18c8088b Merge commit 'ec250717' as 'subtrees/dagflow'
REVERT: ac12566f7 Merge commit 'fb39e612192594a6c6518c09a72dc781f12ab2a2' into feature/pars-gindex
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REVERT: 1f1c32a9f chore: add gindex symlink
REVERT: 236f54260 Squashed 'subtrees/gindex/' content from commit bfee821
REVERT: 2d7b0a8ad Merge commit '236f54260d46f50f48b261b13579b300c42b15d7' as 'subtrees/gindex'
REVERT: 5ad52de74 fix: fix numpy 1.23.1 as there is a conflict between numba and numpy 1.24
REVERT: daaef5c0e chore: fix unit tests, rename variables to parameters
REVERT: a432eff8b feat: reorganize GaussianParameters (inherits Parameters) to GaussianConstraint (member of Parameters)
REVERT: ab2248a56 feat: add marks for Sum and SumSq
REVERT: 8ccd52d95 chore: cleaning
REVERT: 968754df1 feat: add Node._inherit_labels
REVERT: 6a620a2da chore: clean load_parameters from total nuisance
REVERT: b59644df9 chore: variable cleaning
REVERT: fb28e9d56 feat: Node, add labels iterator
REVERT: 4fe69f282 feat: NormalizeCorrelatedVars2, inherit labels
REVERT: 2f438b6d2 feat: load_parameters, add nuisance groups
REVERT: 05fd14b9b feat: Node, add `to_dict` for variable-like outputs
REVERT: d89e86fd1 chore: variable, remove `normvalue` from `to_dict`
REVERT: 9fd013e51 feat: parameters - add a set of normalized parameters
REVERT: 623554677 feat: load_parameters, add individual parameters
REVERT: 7df95ec64 feat: parameters, add single Parameter and GaussianParameter
REVERT: 5366b87b3 feat: Output.seti to set particular field of the output
REVERT: c0fa1348e feat: variables, export to dictionary
REVERT: c7d647ef9 Merge commit 'a5a4baf5'
REVERT: 2bd9deec8 chore: update dictwrapper (MultikeyDict)
REVERT: 41834c1b3 Merge commit '157b766fa218e08ae48afdfa9bb9e5446e97cdf6' into feature/parameters-organization
REVERT: 157b766fa Squashed 'subtrees/dictwrapper/' changes from fbb3811..31a2c74
REVERT: a931649c1 Merge commit '21ccc542'
REVERT: 481cafd1a feat: LoadFileWithExt logging
REVERT: 30dcceb5a Merge commit 'addeab8f'
REVERT: 24081d596 feat: LoadFileWithExt logging
REVERT: c4ec8d88e Merge commit '91cc64ec'
REVERT: 491844d3e feat: LoadFileWithExt logging
REVERT: c5551dcb7 Merge commit 'a0d6ee58'
REVERT: ee99f9f4a feat: LoadFileWithExt logging
REVERT: 49d95257a chore: clean logger
REVERT: a4c8a24bb Merge commit 'da14a0e1'
REVERT: ba6d5690b chore: load_parameter, improve validation
REVERT: 0870742d2 Merge commit 'cf3ba427'
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REVERT: d15ea2b0c Merge commit '5180dd6f'
REVERT: 964f59a07 chore: variable → parameter
REVERT: 8d32759fc feat: load_variables, support lists
REVERT: 1bdb5f93f Merge commit '698b9e93'
REVERT: 60baeb4f1 feat: load_variables, accept also contextlib.Path
REVERT: 8020c549e Merge commit '1d3d9e38'
REVERT: 625ac07e5 feat: LoadFileWithExt, optionally update the dictionary
REVERT: 8db818385 feat: load_variables, configure sub path
REVERT: c957a88f0 Merge commit 'ee7b5a8c'
REVERT: 0b115a369 feat: LoadFileWithExt, optionally update the dictionary
REVERT: 8b7c82865 Merge commit 'ab5c2031'
REVERT: c4b1b1285 feat: LoadFileWithExt, optionally update the dictionary
REVERT: b829d99ba Merge commit 'c6199779'
REVERT: 290035839 chore: Parameters, properly treat kwargs
REVERT: e8a898040 feat: load_variables, configure sub path
REVERT: a2af35113 feat: bundle load_variable `state` option
REVERT: a39073df6 feat: Parameter/GaussianParameter, `__slots__`, `free`/`constrained`/`fixed`/`variable`/`correlated` properties
REVERT: d7974b2af feat: load_variables, enable loading the files
REVERT: 7646352f9 feat: more schema modules
REVERT: e874df2c1 feat: graphviz add mid-nodes to handle single output to multiple inputs connection
REVERT: 80f2c3d0c update conftest.py
REVERT: 432ce4de2 Merge commit 'e758008b'
REVERT: 63525278a feat: bundle load_variable `state` option
REVERT: b6dc9a47f feat: Parameter/GaussianParameter, `__slots__`, `free`/`constrained`/`fixed`/`variable`/`correlated` properties
REVERT: 289b18f28 feat: load_variables, enable loading the files
REVERT: 4b237e30a feat: more schema modules
REVERT: 249aa720a feat: graphviz add mid-nodes to handle single output to multiple inputs connection
REVERT: d356a1177 Merge commit 'ec250717' as 'subtrees/dagflow'
REVERT: 06e5de799 omit subtrees from coverage report
REVERT: 5bd12830e feat: load_variables, enable loading the files
REVERT: 7ace3d4ff feat: more schema modules
REVERT: 5932df691 feat: graphviz add mid-nodes to handle single output to multiple inputs connection
REVERT: f3d467271 Merge branch 'fix/issue-32' into 'master'
REVERT: 33e593695 remove Node.logger creation
REVERT: fa882cee9 [issue: #32] fix extra logger creation
REVERT: ab319f3da Merge branch 'feature/parameters-organization' into 'master'
REVERT: d59e5e0f7 Squashed 'subtrees/dictwrapper/' changes from 0a60e21..a3ea5a2
REVERT: ceab5329c Merge commit 'd59e5e0f715744779a1f870ed4fe5cabe57b45b4' into feature/parameters-organization
REVERT: d62b87065 chore: fix issues from !22
REVERT: f79da2c70 chore: fix errors (unit tests)
REVERT: 5178d6bc2 feat: load_variables bundle
REVERT: 77bcffceb chore: dagflow.tools → dagflow.iter
REVERT: 9888c5b94 feat: tools.schema.NestedSchema to work with nested configurations
REVERT: b7fc24568 Merge branch 'master' into feature/parameters-organization
REVERT: df4285d43 fix: NormalizeCorrelatedVars2, setup agreement on how to update when sigma/central are modified
REVERT: ca8596ba8 chore: graphviz do not add empty status bar
REVERT: 5e123aa23 draft: variables, initialize nodes
REVERT: 340f730f1 feat: graphviz, print ninputs
REVERT: 5967d6003 chore: remove `undefined`
REVERT: 9a88d0fa8 feat: Node._label: str → dict
REVERT: ac2e758e3 draft: variables, finalize labels validation
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REVERT: d2bcba7a3 redesign DataDescriptor
REVERT: ffa2161c9 draft: variables cfg reading
REVERT: 90ac89928 draft: complete schema for variables
REVERT: a0869b0ee [issue: #31] Adding DataDiscriptor field into Input and Output and update other sources and tests
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REVERT: 555b74535 fix: check_inputs_square_or_diag
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REVERT: ea251af49 chore: cleaning for !19
REVERT: bb5afe83f subtree: link
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REVERT: c4c45bc01 feat: SumMatOrDiag node
REVERT: b06c59042 chore: switch to cacheing njit
REVERT: e2b54777a feat: graphviz, better data handling during exceptions
REVERT: c56a3271a feat: check_inputs_square_or_diag
REVERT: bd3a1dd76 chore: cleaning
REVERT: 697fd9d66 chore: NormalizeCorrelatedVars2, avoid outdated values
REVERT: 97087e9f0 feat: ElSumSq - elementwise sum of squares
REVERT: aee3d5d8a feat: check_inputs_same_dtype
REVERT: 4fde39fb5 feat: SumSq node
REVERT: 8b2071023 test: Sum
REVERT: 871016fac chore: cleaning
REVERT: 0948884ce chore: Sum/Product, check equivalence
REVERT: b15055fbe feat: input.get_data_unsafe
REVERT: 2684661bf feat: typfunctions, handle for AllPositionals
REVERT: 996146bf0 Merge branch 'feature/parameters-norm' into 'master'
REVERT: b1f5cb85c chore: revert non-mutable arguments
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REVERT: f448816b8 fix: test for variable
REVERT: ef67b7d8b feat: variable, add 'cor' mode (sigma, correlation as inputs)
REVERT: 29bb594ab fix: Node, fix positional/keyword
REVERT: 9a0562700 feat: finalize GaussianParameter
REVERT: a2c477196 feat: node CovmatrixFromCormatrix
REVERT: 7257e2b68 test: NormalizeCorrelatedVars2, check immediate computation
REVERT: 2bccd70ed feat: graphviz data justification
REVERT: ea570878e deprecate: SharedInputsNode
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REVERT: 37382a16d fix: minor
REVERT: 4eaa8de37 fix: unit test
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REVERT: 6bdb6d66d chore: check_has_input→check_has_inputs
REVERT: 1e2160fb2 chore: check_has_input→check_has_inputs
REVERT: ce05077f7 chore: fix SharedInputNode
REVERT: f2a29aae2 Merge branch 'master' into feature/parameters-norm
REVERT: 6044ee5c3 feat: NormalizeCorrelatedVars2 to provide correlatednormalized conversion (two way)
REVERT: 6fbc10f6a chore: clean taint propagation
REVERT: 95e245593 feat: graphviz, status information
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REVERT: 005725f68 fix of mode arg
REVERT: 4f8c2ce9c adding 3x3 test
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REVERT: 38d9b62c1 chore: graphviz view
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REVERT: 57af167ba test: variables
REVERT: 5c97fca1a feat: variable, finalize 2way correlateduncorrelated variables calculation (draft)
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REVERT: 8afa00f7c update requirements.txt
REVERT: a3c3a94ae adding integrator tests and comments; improving integrator; renaming and redesigning check_has_inputs -> check_has_input to keep common code style
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REVERT: 20e712955 fix: make node iterate all the inputs on recursive operations, improve logging
REVERT: 1c91957f7 fix missing_input_handler calling with zero outputs, adding check_has_input type-function, remove binning reduction, fix tests
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REVERT: 966032138 test: Array's graph
REVERT: dc77fccc3 fix: Output reallocation, protect from None
REVERT: 3ecf89b20 fixing integrator algorithms: right output dimensions, works with integration into one bin; fixing and imporoving type function; fix and improve test
REVERT: 7f911c1ff simplify buffer allocation
REVERT: a26417a75 upgrade checks in Integrator, update type function
REVERT: fcbae0e01 adding type hints and docstrings
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REVERT: 8c68d00b9 adding 2d integration, update test
REVERT: de46a4dcf some fixes in Integrator and start work on 2d version
REVERT: 6f58a61fb [issue: #29] implement the `Integrator` node using `numpy.trapz` and add the test; change data getter in `Output`: remove `touch` from unsafe getter and move it to the ordinary getter; change output data getter in `Input`: if the `Node` is being evaluated, trigger deep evaluation, else get the data directly; adding new type function; small fixes
REVERT: 55034e134 Merge branch 'master' into feature/parameters-norm
REVERT: cdf7597ef Merge branch 'feature/shared-input-taint' into 'master'
REVERT: 5da3b1190 chore: imports
REVERT: e3c1104c7 chore: fix unit tests
REVERT: 5d58386d4 test: GaussianParameters
REVERT: 785b02829 feat: show exceptions in graphviz plots
REVERT: e1b09ce4e feat: mark for Cholesky
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REVERT: 1a98ade40 feature: add Parameters/GaussianParameters classes (draft)
REVERT: 76e2cf6ef chore: clean tests
REVERT: 5d6393420 chore: marks
REVERT: aff1b29ef feature: node/graphviz add short mark for the node type
REVERT: c0664e57f feat: close Array, if it owns the buffer
REVERT: 4a98d680d chore: compatibility with Python <3.10 (strict zip)
REVERT: 69adecee6 chore: style
REVERT: 6260cd918 test: NormalizeCorrelatedVars
REVERT: c3eea094c feat: complete NormalizeCorrelatedVars, forward and backward
REVERT: 1ae2638ec feat: typefunctions, add `check_inputs_multiplicable_mat`
REVERT: f214d9cd3 test: test Cholesky with different dtypes
REVERT: 181fa22a3 feat: Cholesky, support 1d inputs (diagonal)
REVERT: 160253bb9 feat: graphviz, information on outputs and inputs
REVERT: e36ba5ec4 feat: typefunction to check squareness (or diagonals)
REVERT: 3ef78fb7f chore: remove obsolete `EdgeContainer.__dir__`
REVERT: d5e53cc9b test: Cholesky
REVERT: 539cc9587 feat: `check_input_square` type function
REVERT: 5ebff3323 fix: MissingInput formatting
REVERT: 3406915c6 feat: add Cholesky decomposition
REVERT: 90caae05d draft: Cholesky/NormalizeCorrelatedVars nodes
REVERT: e4d732493 feat: clever inputs/outputs enumeration (hide '_00')
REVERT: 19d07dfef Merge branch 'master' into feature/shared-input-taint
REVERT: a6b1525b9 Merge branch 'feature/scalable-typefunctions' into 'master'
REVERT: d13afb17c chore: use f-strings in `Edges`
REVERT: 3465b6703 Merge branch 'feature/scalable-typefunctions' into feature/shared-input-taint
REVERT: 420dbf2f6 chore: update the usage of typefunctions
REVERT: 11e956e95 feat: make typefunctions scalable
REVERT: f4c787725 feat: add `Edge.iter` and `Edge.iter_data`
REVERT: db81ba2cc feat: add `Edges.iter_data()`
REVERT: 018e98c2a chore: Merge `SettableOutput`→`Output`, `VariableArray`→`Array`
REVERT: 3a423dda5 feat: SharedInput, taint parents
REVERT: 291d5631e chore: rename `Node.post_allocate()` to `Node._post_allocate()`
REVERT: 9720977b0 chore: clean VariableOutput
REVERT: cdbf2e432 feat: Array, add 'store_weak' - reallocatable storage in Array
REVERT: 4d20332c0 feat: SharedInputNode, keep the list of callers
REVERT: 153ceeb64 feat: add caller argument four `Node.touch()`, add `Node._on_touch()` hook
REVERT: 27218f9b8 test: SharedInputNode
REVERT: 3454f708e test: SharedInputNode
REVERT: fda7e0f9b Merge branch 'feature/type-functions-update' into 'master'
REVERT: 4c3612691 fix input dimension and type checks
REVERT: 5efab1d0b adding new type-function with dtype and shape checking for all the inputs
REVERT: 559997523 adding checks of input dimension and dtype
REVERT: f0b5d05a4 rename one check and fix annotations
REVERT: a2dfda6ee update TODO.md
REVERT: 209d578da [issue: #28] move type functions into a separate file and update the lib
REVERT: ef76a8d8e update TODO
REVERT: 41e056b72 Merge branch 'updates' into 'master'
REVERT: 912e27817 fix: MR !12
REVERT: cd334caf4 fix: MR !12
REVERT: f7bce2b52 chore: Output, keep data continuity during reallocation
REVERT: ea82aa5fa chore: cleaning
REVERT: 72392fc64 chore: test all View combinations
REVERT: 50b6cad70 chore: clean Views
REVERT: 5d5aa444a chore: graphviz, survive disconnected graphs
REVERT: 5e33fc183 chore: rename `owns_data` to `owns_buffer`
REVERT: e9c7d4d77 chore: update View to catch reallocations
REVERT: a037ff5e6 feat: Output._forbid_reallocation: bool to handle allocating inputs
REVERT: 8196ab946 feat: View, catch connections to allocating inputs
REVERT: b8508f5f9 test: extend unit tests for View/SharedInputsNode
REVERT: 570ed6bbb feature: Node.get_data() to return 0th data if no arguments are passed
REVERT: c42492e0b chore: graphviz, dpi, enumeration
REVERT: 4b032f90d chore: Graph, rerize exceptions (context)
REVERT: 9be9d4dfc chore: Edges, len/index methods
REVERT: 17124e4aa chore: add coverage.json to .gitignore
REVERT: 5e665a57b fix: fix unit tests on older Python
REVERT: 0ef5bf10c chore: clean View
REVERT: b611f9968 feature: add View transformation
REVERT: fbad37590 chore: cleaning
REVERT: ac0ec8edc Merge branch 'updates' into parameters
REVERT: e7e49a7c5 chore: clean SharedInputNode
REVERT: a42fe76aa feature: ViewConcat node, foces inputs to be allocated in the same continuous buffer
REVERT: add0216b2 feature: graphviz, show numbers of positional inputs/outputs (if >1)
REVERT: 7b1e8f98e chore: clean up allocation for Inputs/Outputs
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REVERT: 80df55aaf feature: Array now supports modes, 'fill' and 'store'
REVERT: dfaa7270d fix CI
REVERT: 603a4a69a exclude all standard packages from coverage and leave only the project path
REVERT: cb7cb655f chore: unit test for ViewConcat
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REVERT: a26c7aec9 adding coverage to CI
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REVERT: b546adebb chore: remove coverage report for command line
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REVERT: 01509574c feature: Array now supports modes, 'fill' and 'store'
REVERT: 140586f79 Merge branch 'master' into parameters
REVERT: 38101ccbc chore: clean Input allocation
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REVERT: 4d9221b5f avoid default mutable arg and update codestyle
REVERT: cd3ee46ba avoid default mutable arg and update codestyle
REVERT: 2e045f456 Merge branch 'chore/function-switch' into parameters
REVERT: 0d9298b66 chore: minor
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REVERT: 8229cfefd chore: organize Output's data allocation
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REVERT: 88d8305e3 chore: clean Node
REVERT: d2df4b62c feature: MissingInputHandler - output_kws
REVERT: e24daa954 chore: organzie EdgesContainer
REVERT: 01ae36ea2 fix opening: now open not parents but child nodes; fix the test
REVERT: 7f93ec300 Adding check on inputs length into the WeightedSum, some info in TODO
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REVERT: cedcbdaaf fix funciton in WeightedSum
REVERT: 95c331901 rename evaluated to evaluating
REVERT: e074a6492 Redesign WeightedSum; fix adding inputs and outputs to node; update TODO
REVERT: eb20a4c47 remove print and avoid direct data usage
REVERT: b83644d82 Merge branch 'chore/function-switch' into parameters
REVERT: 14f54b280 Merge branch 'chore/function-switch' of git.jinr.ru:dag-computing/dag-flow into chore/function-switch
REVERT: 8ec645973 fix: Node.get_data
REVERT: 9b578a52d chore: cleaning
REVERT: c176740be fix: EdgesContainer, iterate positionals
REVERT: 165c90c84 feat: add `ViewConcat` draft
REVERT: 3c79fb7ac chore: cleaning
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REVERT: 0093d8cd9 remove recursive key from input.allocate, remove debug info from lib, remove some comment
REVERT: 7f57eb283 update codestyle, fix get_data_unsafe, rename recursivly -> recursive
REVERT: 172f64bd2 another try to fix coverage report
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REVERT: a27d3c313 adding coverage reports and update requirements
REVERT: dee866a72 remove checks in input, adding unsafe data getter into output, adding skeleton of post_allocate, etc
REVERT: 45aa55a99 adding function switching, update WeightedSum, adding the test
REVERT: d2b5f5c87 rempove extra import
REVERT: 5425e224a adding recursive closing option and remove duplicate methods, adding closing and opening exceptions classes and insert into closing procedure, adding test on closing of two graphs and test on non-recursive closing, clean some extra imports, update codestyle
REVERT: eedae3427 Merge branch 'parameters' into feature/View
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REVERT: 9e8de2d36 chore: cleaning
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REVERT: 476098d02 a lot of refactoring, cancel previous shift operators changes, improving...
REVERT: 703f25820 chore: use List[] instead of list[] for type hinting so dagflow works on the older python
REVERT: c9abadaf2 test: update test View
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REVERT: ce4fca4a5 chore: View, use np.view
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REVERT: 51b5b00b2 chore: remove ReferenceType
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REVERT: a9b458ab5 chore: type hinting (output/input)
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REVERT: e07b67c1a Merge branch 'update-to-data-preservation' of git.jinr.ru:dag-computing/dag-flow into update-to-data-preservation
REVERT: c83bc929c fix artifacts
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REVERT: e23c2f52e feature: add Parameter and GaussianParameter objects
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REVERT: 0944f94c5 feature: optimize Array
REVERT: 1866ffbb3 chore: move FunctionNode and StaticNode into separate file
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REVERT: baef26a6b fixing closure procedure; fixing test; adding some logging; other fixes
REVERT: c04af02a5 redesign new closure algorithm
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REVERT: 40978ece1 rename iinput to parent_output
REVERT: bba84a5b7 update type and shape functions; update TODO; adding Concatenation node
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REVERT: 3292f0477 fixing the type and shape functions; adding binding from dict; update TODO; remove some unused code, adding comments and logging output
REVERT: 860defc20 fixing type and shape functions, fixing libs and tests, update TODO
REVERT: 450197848 moving of prints to the logging is finished, fix logging duplicates, some other fixes
REVERT: 876dd99dd adding logger (work in progress), adding change of the test path to the `test`, some other updates
REVERT: d36acdbae fixing preallocation, update types and shapes, fixing examples and hooks
REVERT: 8e3cdb68d Adding memory allocation, type and shape, other changes
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REVERT: 056cde65a implmenting WeightedSum, redesigning undefined classes, update TODO, new examples.
REVERT: 4b0b61945 Adding NOTE to the NodeClass decorator, create working simple transformations, update example, delete pdf and png, update TODO, some codestyle updates
REVERT: 4312e63ec a lot of refactoring, cancel previous shift operators changes, improving codestyle, renaming corresponding_output -> iinput, adding TODO.md, etc
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git-subtree-dir: dagflow
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